HMRC says I've split my business to avoid VAT, what now?

HMRC believes you've artificially separated one business into smaller entities to stay under the VAT threshold. Under paragraph 2, Schedule 1 VATA 1994, it can direct that the businesses be treated as one for VAT purposes, backdating registration and the VAT liability that follows. You can challenge the direction.

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Do this first

Set out clearly, in writing, the commercial reasons for operating separate businesses.

If the reply date on your letter is within 14 days, call 020 3441 1258 rather than waiting, or check the reply to an enquiry you have already sent.

Key facts

Statutory basis
Paragraph 2, Schedule 1 Value Added Tax Act 1994, disaggregation direction
Applies to
Closely linked businesses under common financial, economic or organisational ties
Effect of a direction
Combined turnover is treated as one business from a date HMRC sets, usually going forward but sometimes backdated
Time limit to challenge
30 days from the direction to request review or appeal
Appeal route
Statutory review under section 49 or appeal to the First-tier Tribunal under section 83

The short answer, explained

HMRC's disaggregation rule targets businesses it believes were split up purely to keep each part under the VAT registration threshold.

Common examples include two companies running the same café at different times of day, or a husband and wife each running half of what was previously a single trade, with shared premises, staff or equipment.

If HMRC issues a direction, it treats the separate businesses as one for VAT purposes from a date it specifies, which can mean an immediate and sometimes backdated VAT liability.

The rule behind it

Paragraph 2, Schedule 1 VATA 1994 gives HMRC power to direct that separate legal persons be treated as a single taxable person, where it considers the separation is artificial and its main purpose is avoiding VAT registration.

HMRC looks at financial, economic and organisational links: shared bank accounts, shared premises, shared staff, common pricing, and whether customers experience the businesses as one operation.

A direction generally takes effect from the date it's given, but genuine commercial substance behind the separation is your main defence. If the businesses operate independently with separate risk, separate customers and separate management, the direction is harder for HMRC to sustain.

What this means for a limited company director

If you run more than one company, or a company alongside a sole trade, with any overlap in premises, staff or customers, this rule is worth understanding before HMRC ever raises it.

A direction can mean sudden compulsory registration for the combined turnover, VAT due on past sales you never charged VAT on, and the administrative burden of untangling shared costs between entities for VAT purposes going forward.

Directors facing this should gather evidence of genuine separation early: distinct contracts, separate accounting, independent decision-making and real commercial reasons for the structure, not just tax ones.

What this costs you

If the direction stands, you face VAT on the combined turnover from the effective date, potentially with failure to notify penalties under Schedule 41 Finance Act 2008 if registration should have happened earlier.

Professional fees to defend a disaggregation case can be significant, since it usually involves detailed evidence-gathering about how the businesses actually operate.

Growth plan clients get free tax investigation insurance included, which can cover the professional costs of contesting a disaggregation direction. See /fees for details.

Common mistakes to avoid

Don't share a bank account, till, or staff rota between businesses you want treated as separate; this is exactly the evidence HMRC looks for.

Don't assume separate companies automatically mean separate VAT registrations. Legal separation alone doesn't defeat a disaggregation direction if the economic reality is one business.

Don't respond to HMRC's questions without first mapping out the genuine commercial reasons for your structure. Vague or inconsistent answers strengthen HMRC's case.

What to do next

  1. Set out clearly, in writing, the commercial reasons for operating separate businesses.
  2. Gather evidence of independent management, contracts, staff and accounting for each entity.
  3. Respond to HMRC's questions factually and consistently across all correspondence.
  4. Request a statutory review within 30 days if HMRC issues a direction.
  5. Get specialist advice before deciding whether to appeal to the tribunal.

Where we can help

Sources

About the author

Waqas Sagar ACA FCCA FMAAT, Managing Director. 18+ years advising UK directors on HMRC enquiries, supported by a team with over 100 years' combined experience.

Reviewed: 16 September 2026 · Next review: 16 March 2027

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