How are HMRC penalties calculated?

HMRC calculates most penalties as a percentage of the tax you underpaid, called the potential lost revenue. The percentage depends on your behaviour, ranging from no penalty for a reasonable excuse to the highest rates for deliberate and concealed errors, then reduced further for the quality and timing of your disclosure.

Regulated by ICAEW, ACCA & AATTeam of qualified accountantsFully insured London based firm (up to £2m indemnity)Trusted by thousands of UK businesses★★★★★ 4.9/5.0 from 302 Google reviews

Do this first

Ask HMRC to set out the potential lost revenue figure in writing.

If the reply date on your letter is within 14 days, call 020 3441 1258 rather than waiting, or check the reply to an enquiry you have already sent.

Key facts

Statutory basis
Schedule 24 Finance Act 2007 for inaccuracies; Schedule 41 Finance Act 2008 for failure to notify.
Applies to
Self Assessment, Corporation Tax, VAT and PAYE returns found to be inaccurate or late.
Starting point
The potential lost revenue: the extra tax due because of the inaccuracy or failure.
Reductions
Percentage drops for telling, helping and giving access, and for unprompted disclosure.
Time limit
HMRC must generally raise the penalty assessment within 12 months of the tax being established.
Appeal route
You can appeal to HMRC first, then to the First-tier Tribunal if unresolved.

The short answer, explained

HMRC does not charge a flat penalty. It works out the extra tax you owe, called the potential lost revenue, and applies a percentage to that figure.

The percentage depends on two things: how the inaccuracy came about, and how you behaved once HMRC or you found it. A genuine mistake made despite reasonable care can attract no penalty at all. A deliberate and concealed error attracts the highest percentage in the range.

Within each behaviour band, HMRC then reduces the percentage based on the quality of your disclosure. Telling HMRC everything, helping them establish the size of the problem, and giving them access to records all count in your favour.

The rule behind it

The framework sits in Schedule 24 Finance Act 2007 for inaccurate returns and Schedule 41 Finance Act 2008 for failing to notify a tax liability, such as not registering for VAT or Self Assessment when required.

Both schedules use the same structure. There is a behaviour category, a disclosure type, and a percentage range within that combination. HMRC caseworkers must show their working, and the resulting figure should sit somewhere in the statutory range for your circumstances, not above it.

Where you have taken reasonable care and simply made an error, no penalty applies at all. The system is designed to be proportionate to fault, not to punish honest mistakes.

What this means for a limited company director

Penalties can fall on the company, on you personally, or on both, depending on which tax and which return is involved. A Corporation Tax inaccuracy penalty is usually charged to the company; a personal Self Assessment penalty is yours alone.

As director, you're often the person HMRC deals with during the enquiry, so your conduct in meetings and correspondence directly affects the disclosure reduction. Being slow to respond or withholding records can push the percentage upward even where the underlying error was innocent.

If your company has multiple errors across different years, HMRC calculates the potential lost revenue separately for each, then applies the relevant behaviour and disclosure reduction to each one. The total penalty can look large even when individual errors are modest.

What this costs you

Because the penalty is tax-geared, the cost scales directly with how much tax was underpaid, not with how the error happened. A small inaccuracy on a large tax bill can still produce a meaningful penalty.

On top of the penalty, HMRC charges interest on the unpaid tax from when it was originally due, so the total bill is usually tax plus interest plus penalty. Growth plan clients get free tax investigation insurance included, which covers professional fees if HMRC opens an enquiry — see /fees for details.

Getting professional representation early often reduces the final penalty percentage, because a specialist knows how to present disclosure in the way HMRC's guidance rewards.

Common mistakes to avoid

Don't assume the penalty is fixed once HMRC states a figure. The percentage within the range is negotiable based on cooperation, and caseworkers sometimes start high.

Don't delay responding to HMRC's letters. Slow engagement is treated as poor cooperation and can cost you the maximum available reduction.

Don't confuse the penalty percentage with the tax bill itself. Directors sometimes panic at a headline percentage without checking it applies to the tax underpaid, not turnover or total income.

What to do next

  1. Ask HMRC to set out the potential lost revenue figure in writing.
  2. Check which behaviour category and disclosure type HMRC has applied.
  3. Gather evidence of cooperation to support the maximum reduction.
  4. Get an accountant to review the calculation before you agree it.
  5. Appeal within 30 days if you disagree with the final figure.

Where we can help

Sources

About the author

Waqas Sagar ACA FCCA FMAAT, Managing Director. 18+ years advising UK directors on HMRC enquiries, supported by a team with over 100 years' combined experience.

Reviewed: 16 September 2026 · Next review: 16 March 2027

Why directors bring their HMRC letter to us

  • Regulated by ICAEW, ACCA & AAT
  • Team of qualified accountants
  • Free tax investigation insurance with Growth plans
  • Dedicated accounts manager*
  • Trusted by thousands of UK businesses
  • Never miss any deadlines — guaranteed
  • Free telephone and email support
  • Fully insured London based firm

*Included on the Growth plan — see our fees.

Answered from our office in Morden, South London

How are HMRC penalties calculated? is handled by the same team at Accotax London Limited, 12 London Road, Morden, London SM4 5BQ. We deal with HMRC compliance checks for limited company directors across Morden, Wimbledon, Mitcham, Sutton, Croydon, Kingston and central London, and by video call for companies anywhere in the UK.

Office
12 London Road, Morden, London SM4 5BQ
Open
Monday to Friday, 9:00am to 5:30pm
Speak to us
020 3441 1258

Directions, opening hours and our business listings · Already sent us a letter? Read our reply

Speak to a chartered accountant about your HMRC letter

Send us the letter and we will tell you what HMRC is asking for, what it can insist on, and what your realistic options are.

Prefer a written reply? See how our HMRC enquiry service works.

Confidential first conversation

Send us your HMRC letter details

Tell us what the letter says and we will come back to you with the deadline, what HMRC can insist on and the safest next step.

020 3441 1258

Your details and any letter you upload are stored privately and used only to assess and respond to this enquiry. Sending this form does not appoint us or extend an HMRC deadline.

Four London offices

Meet us in Morden, Croydon, Chelsea or Mitcham

Work with us entirely online, or sit down with your accountant at whichever office suits you. Open Monday to Friday, 9:00am to 5:30pm. Office visits are by appointment only, so please book before coming in.

Morden, Surrey12 London Road, Morden, SM4 5BQHead office, two minutes from Morden Underground station.DirectionsRead ACCOTAX Google reviews
Croydon73 Park Lane, Croydon, CR0 1JGCentral Croydon, minutes from East Croydon station.DirectionsRead Croydon Google reviews
ChelseaM-112, 65-69 Lots Road, SW10 0RNWest London base for Chelsea, Fulham and Kensington clients.DirectionsRead ACCOTAX Google reviews
Mitcham141 Morden Road, CR4 4DGServing Mitcham, Tooting and the CR4 postcodes.DirectionsRead Mitcham Google reviews

Free, no obligation

Book a call

Pick a time that suits you and a qualified accountant will call you about your company, deadlines and fees.

Appointments run monday to friday, 9:00am to 5:30pm. Your confirmation is emailed straight away.

WhatsApp